A PDB file is created when you compile a C/C++ program with /ZI or /Zi or a Visual Basic, Visual C, or JScript program with the /debug option. This is an interactive online session that is presented remotely using GoToTraining. pdb) is a binary file that contains type and symbolic debugging information gathered over the course of compiling and linking the project. This session is aimed at people who work on proteins or protein-related data, and would like to find structural data to help support their work.
Pdb database how to#
You will learn how to access these pages, navigate the various sections, and understand how to do more in-depth analysis of data in the PDB. You can, however, plug-in a non-CDB (not container database) as a PDB (pluggable database). Its a decision you have to make when creating the database. This includes structural coverage, ligand interaction sites, protein-protein contacts, and functional annotations from a range of external databases. As far as Im aware you cannot convert a non-CDB to CDB.
When you build a project using Visual Studio or command prompt the compiler creates these symbol files. The following figure illustrates how this. Program Debug Database file (pdb) is a file format by Microsoft for storing debugging information. The statement copies these files to a new location and associates them with the new PDB. The first output from PDBe-KB are the aggregated views of proteins, which present all the structural data available for a specific protein. Use the CREATE PLUGGABLE DATABASE statement to create a new PDB by using the files of the PDB seed or an application PDB from the files of an application seed or the PDB seed. In this session we will introduce PDBe Knowledge Base (PDBe-KB), a new, community-based resource which brings together PDB data and functional annotations in innovative ways.
Are you a bit overwhelmed by all the structural data in the PDB? Would you like to more easily identify functional sites in protein structures? Then this could be the session for you.
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